PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G077300.1
Common NameB456_008G077300, LOC105763373
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 240aa    MW: 26387.6 Da    PI: 6.1366
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G077300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.2e-1698144455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  E+rRR+riN+++  L+ l+P+a      K +Ka++L +++eY+k+Lq
  Gorai.008G077300.1  98 VHNLSEKRRRSRINEKMKALQNLVPNA-----NKTDKASMLDEVIEYLKHLQ 144
                         6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.86E-1790148No hitNo description
Gene3DG3DSA:4.10.280.101.8E-1991154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1991154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.47994143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1398144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-16100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAYFGGLTEN PRRFSRSEAP PGGGAVKKGM IDYSERQSGG SGNMITAAGE NGTTDDQDCE  60
SEFEICPRQE GLEALVDEAP PKSAPSRSSS KRNRAAEVHN LSEKRRRSRI NEKMKALQNL  120
VPNANKTDKA SMLDEVIEYL KHLQLQVRIL SMRNGLSMHP MCLAGVPQPV QFSQTRIDTN  180
ASFTVPATQE TQPQMVFDIP NQCSSSNPEL VLDLPNMISS NTSVGLEFWN QSGPMDHFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437055.11e-180PREDICTED: transcription factor SPATULA-like
SwissprotQ9FUA46e-43SPT_ARATH; Transcription factor SPATULA
TrEMBLA0A0D2RBJ21e-180A0A0D2RBJ2_G
STRINGVIT_07s0031g00450.t013e-63(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41992754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-40bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]